Resolving spatial heterogeneity of the cytoplasm in living cells

Jay Newby (May 6, 2020)

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Abstract

Despite being one of the fundamental cell structures, we know surprisingly little about the cytosol. Its physical properties are difficult to measure due to technical challenges: the means of spatially resolving viscosity, elasticity, flow, crowding, and confinement within cells that fluctuate and grow. Changes in macromolecular crowding can directly influence protein diffusion, reaction rates, and phase separation. I will discuss new particle tracking tools and how we use them to quantitatively measure the physical state of the cytosol by studying the three-dimensional stochastic motion of genetically expressed fluorescent nanoparticles (GEMs). Using these particle probes, we find that the physical properties of the cytosol vary significantly within and between cells, indicating that the fundamental state of the cytosol is a key source of heterogeneity within genetically identical cells.